Please note: this is a maintained version of a former webpage in Berlin.
backTheses
Scheid S (2006):
Novel concepts for the significance analysis of microarray data
PhD Thesis, Free University Berlin.
[ online version FU Berlin | pdf with hyperlinks ]
Scheid S (2001):
Die verallgemeinerte Lognormalverteilung (The generalized lognormal distribution)
Master Thesis, University of Dortmund.
[ pdf | ps ]
Papers
Scheid S and Spang R (2007):
Compensating for unknown confounders in microarray data analysis using filtered permutations
Journal of Computational Biology 14(5):669-681.
[ PMID: 17683267 | doi:10.1089/cmb.2007.R009 ]
Rhein P, Scheid S, Ratei R, Hagemeier C, Seeger K, Kirschner-Schwabe R, Moericke A, Schrappe M, Spang R, Ludwig WD, and Karawajew L (2007):
Gene expression shift towards normal B cells, decreased proliferative capacity and distinct surface receptors characterize leukemic blasts persisting during induction therapy in childhood acute lymphoblastic leukemia
Leukemia 21(5):897-905.
[ PMID: 17330098 | doi:10.1038/sj.leu.2404613 ]
Lottaz C, Yang X, Scheid S, and Spang R (2006):
OrderedList - a Bioconductor package for detecting similarity in ordered gene lists
Bioinformatics 22(18):2315-2316.
[ PMID: 16844712 | doi:10.1093/bioinformatics/btl385 ]
|
Scheid S and Spang R (2006):
Permutation filtering: A novel concept for significance analysis of large-scale genomic data In: Apostolico A, Guerra C, Istrail S, Pevzner P, and Waterman M (Eds.): Research in Computational Molecular Biology: 10th Annual International Conference, Proceedings of RECOMB 2006, Venice, Italy, April 2-5, 2006. |
ISSN: 03029743, ISBN: 3540332952.
[ doi:10.1007/11732990_29 | pdf | notice ]
Yang X, Bentink S, Scheid S, and Spang R (2006):
Similarities of ordered gene lists
Journal of Bioinformatics and Computational Biology 4(3):693-708.
[ PMID: 16960970 | doi:10.1142/S0219720006002120 ]
|
Scheid S and Spang R:
Chapter 18 - Microarray Data Analysis: Differential Gene Expression In: Ulrike Nuber (Ed.), DNA Microarrays. |
ISBN: 0415358663.
[ BIOS ]
Westhoff TH, Scheid S, Tölle M, Kaynak B, Schmidt S, Zidek W, Sperling S, and van der Giet M (2005):
A physiogenomic approach to study the regulation of blood pressure
Physiological Genomics 23(1):46-53.
[ PMID: 15942020 | doi:10.1152/physiolgenomics.00077.2005 ]
Scheid S and Spang R (2005):
twilight; a Bioconductor package for estimating the local false discovery rate
Bioinformatics 21(12):2921-2922.
[ PMID: 15817688 | doi:10.1093/bioinformatics/bti436 ]
|
Scheid S (2005):
Correspondence clustering of Dortmund city districts In: Weihs C and Gaul W (Eds.): Classification - The Ubiquitous Challenge. Proceedings of the 28th Annual Conference of the Gesellschaft für Klassifikation e.V., University of Dortmund, March 9-11, 2004. |
ISBN: 3540256776
[ ps | notice | Springer ]
Scheid S and Spang R (2004):
A stochastic downhill search algorithm for estimating the local false discovery rate
IEEE Transactions on Computational Biology and Bioinformatics 1(3):98-108.
[ PMID: 17048385 | doi:10.1109/TCBB.2004.24 | pdf | notice ]
Kunz M, Ibrahim SM, Koczan D, Scheid S, Thiesen HJ, and Gross G (2004):
DNA microarray technology and its applications in dermatology
Experimental Dermatology 13(10):593-606.
[ PMID:15447719 | doi:10.1111/j.0906-6705.2004.00243.x ]
Grzeskowiak R, Witt H, Drungowski M, Thermann R, Hennig S, Perrot A, Osterziel KJ, Klingbiel D, Scheid S, Spang R, Lehrach H, and Ruiz P (2003):
Expression profiling of human idiopathic dilated cardiomyopathy
Cardiovascular Research 59(2):400-11.
[ PMID:12909323 | doi:10.1016/S0008-6363(03)00426-7 ]
Scheid S and Spang R (2003):
A false discovery rate approach to separate the score distributions of induced and non-induced genes
Proceedings of the 3rd International Workshop on Distributed Statistical Computing. [ DSC 2003 ]
[ abstract | pdf ]
Technical reports
Scheid S, Lottaz C, Yang X, and Spang R (2006):
Similarities of Ordered Gene Lists - User's Guide to the Bioconductor Package OrderedList
CompDiag Technical Report Nr. 2006/01.
Please download the current version from the OrderedList webpage on Bioconductor.
Scheid S, Jäger J, and Lottaz C (2005):
A toolbox for performing and illustrating microarray data analyses - User's Guide to the R Package compdiagTools
CompDiag Technical Report Nr. 2005/01.
Please download a version from the compdiagTools webpage.
Scheid S and Spang R (2004):
Estimation of Local False Discovery Rates - User's Guide to the Bioconductor Package TWILIGHT
CompDiag Technical Report Nr. 2004/01.
Please download the current version from the twilight webpage on Bioconductor.
Conference abstracts
Kleiber C and Scheid S (2003):
The generalized lognormal distribution as an income distribution
Bulletin of the International Statistical Institute 60:643-644.
[ pdf ]
Scheid S and Spang R(2003):
Estimating the score distributions of induced and non-induced genes in microarray experiments
Bulletin of the International Statistical Institute 60.
[ pdf ]
Kloppert B, Ehrenberg A, Scheid S, Seyd O, Wolter W, and Zschöck M (1999):
Kriterien zur Beurteilung der Eutergesundheit bei Ziege und Schaf unter besonderer Berücksichtigung der Hälftedifferenz im Gehalt somatischer Zellen
7. Gießener Tagung der Deutschen Veterinärmedizinischen Gesellschaft.
ISBN: 3-936815-35-6 (?).
Talks
Der strukturelle EM-Algorithmus und seine Anwendung in der Phylogenie
Defense talk, Free University Berlin, October 27, 2006.
[ pdf | pdf-pp4 ]
Permutation filtering: A novel concept for significance analysis of large-scale genomic data
RECOMB 2006, Venice, Italy, April 2-5, 2006.
[ pdf ]
Multiple testing in SNP analyses
IMBIE, University of Bonn, June 8, 2005.
[ pdf | pdf-pp4 ]
Analyzing microarray data: A roadmap to significant lists of genes
Functional Genomics Center Zurich, October 19, 2004.
[ pdf ]
Estimating the local false discovery rate in microarray experiments
Karlsruher Stochastiktage, Karlsruhe, March 23-26, 2004.
GfKl 2004 Contest: Correspondence clustering of Dortmund city districts
28th Annual Conference of the Gesellschaft für Klassifikation, Dortmund, March 9-11, 2004.
[ pdf ]
A false discovery rate approach to separate the score distributions of induced and non-induced genes
The 3rd International Workshop on Distributed Statistical Computing, Vienna, March 20, 2003.
[ pdf ]
Selected posters
Scheid S, Spang R:
A stochastic downhill search algorithm to estimate local false discovery rates
Statistics in Functional Genomics, Ascona, June 27 - July 2, 2004.
[ a4-ps ]
Scheid S, Spang R:
Estimating score distributions of induced and non-induced genes
RECOMB 2003, Berlin, April 10-13, 2003.
ISI 2003, Berlin, August 13-20, 2003.
[ a4-ps | pdf ]
Scheid S, Spang R:
Reconstructing score distribution mixtures with bin-wise false discovery rates
Day of Science, MPI Berlin, March 27, 2003.
[ a4-ps ]
